initial framework; to be extended

2025-10-23 08:46:48 +02:00
commit 32228496d2
7 changed files with 469 additions and 0 deletions
--- a/env.yml
+++ b/env.yml
@@ -0,0 +1,21 @@
+name: chromatin_gnn_aman
+channels:
+  - pytorch
+  - conda-forge
+  - defaults
+dependencies:
+  - python=3.10
+  - pytorch
+  - torchvision
+  - torchaudio
+  - cooler
+  - pybigwig
+  - pandas
+  - numpy
+  - scikit-learn
+  - matplotlib
+  - umap-learn
+  - pip
+  - pip:
+      - torch-geometric
+