[build-system]
requires = ["setuptools>=68"]
build-backend = "setuptools.backends.legacy:build"

[project]
name = "chromatin-gnn"
version = "1.1.0"
requires-python = ">=3.10"
dependencies = [
    "torch>=2.1",
    "torch-geometric>=2.5",
    "cooler>=0.9",
    "cooltools>=0.7",
    "pyBigWig",
    "numpy>=1.24,<2.0",
    "pandas",
    "scikit-learn",
    "matplotlib",
    "umap-learn",
    "scipy",
]

[tool.setuptools.packages.find]
include = ["chromatin_gnn*"]