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aman
2026-07-20 17:53:08 +00:00
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@@ -239,9 +239,5 @@ Gene/protein names go through scispaCy's `en_core_sci_lg`. Chemical formulas
and units (µM, ng/mL, kb/Mb/Gb, °C, ×g) get normalized, scientific notation and units (µM, ng/mL, kb/Mb/Gb, °C, ×g) get normalized, scientific notation
gets cleaned up (`1.5×10⁻³` → `1.5×10^-3`), and gel/blot figures get their gets cleaned up (`1.5×10⁻³` → `1.5×10^-3`), and gel/blot figures get their
captions pulled out separately. captions pulled out separately.
## TODO
- [x] Build a knowledge graph from extracted entities/citations (see `kg` commands)
- [ ] Entity linking to MeSH/UniProt identifiers - [ ] Entity linking to MeSH/UniProt identifiers
- [ ] GROBID-based structured citation parsing (server optional, regex today) - [ ] GROBID-based structured citation parsing (server optional, regex today)