7de0e716eb
repo hygiene, tooling config, v0.2.0
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- Untrack src/ocr_pipeline.egg-info from git, delete pyproject.toml~,
stale run_008/run_009 dirs
- Ruff config moved to [tool.ruff.lint] (silences deprecation warning)
- Pre-commit: bump revs (ruff v0.14.13, mypy v1.18.1, hooks v6.0.0);
drop redundant isort hook (ruff I already sorts imports)
- mypy: add ignore_missing_imports for optional deps; types-PyYAML in
dev extras; python_version=3.12 for numpy 2.5 stubs compat; CI step
- Doctor: suppress paddle ccache UserWarning noise during check
- CHANGELOG dated for 0.2.0; README minimal-style rewrite with
collapsible details sections
- Bump version to 0.2.0
2026-07-21 00:40:19 +02:00
7503a441c2
kg: graph build, traversal queries, neo4j export - kg_ocr.graph builds a networkx graph (docs, chunks, entities, citations, co-occurrence) from chunk markdown - analyzer for summaries, top entities/citations, anomaly checks - traversal: chunks_for_entity/citation, related_entities, expand_context - export: JSON round-trip, GraphML, batched MERGE into neo4j - new CLI: ocr-pipeline kg build|stats|query|export - lazy kg_ocr imports, networkx/neo4j behind extras - dropped dead watch.py shim, added KgConfig stub - trimmed README, updated TODO
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2026-07-20 19:50:38 +02:00
39655fc35f
add doctor command, fix ISBN false positives, wire up CI
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ISBN regex now requires an explicit prefix, so it stops matching
years, URLs, job IDs, and dilution ratios.
doctor checks the environment end to end: Python, Tesseract,
PaddleOCR, the PyTorch backend, table/figure detectors, scispaCy,
config, DB, output.
CI runs on 2 OS x 3 Python versions plus a doctor smoke job.
Also added a changelog
2026-07-20 12:37:26 +02:00
a0211155fa
refactor: solidify startup UX and engine-aware preprocessing
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- Slim core deps: move ML stack to optional extras (paddle/tables/figures/scientific/full)
- Lazy settings proxy with config search paths (env var, cwd, user dir)
- New commands: init, demo, setup [basic|full], first-run guard on run/watch
- Engine-aware preprocessing: Paddle gets original image (fixes dark mode 0.83->0.95)
- Results table shows Skipped count; lazy run-dir creation
- kg_ocr marked experimental with extra, Docker defaults with OCR_PIPELINE_CONFIG
- 25/25 tests, ruff clean
2026-07-19 22:14:54 +02:00
1cf1c6eeab
improve the OCR pipeline processing and outputs formatting
2026-07-19 19:54:53 +02:00
a32b7508c7
OCR-to-RAG pipeline for life science screenshots
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PaddleOCR with preprocessing, scispaCy NER, figure/table detection,
citation extraction, and chunked Markdown output with frontmatter.
Includes watch mode and notebook reprocessing.
2026-07-18 19:35:21 +00:00
cbfcf1e315
added scaffold struct for the prj
2026-03-24 14:58:58 +01:00
