[build-system]
requires = ["setuptools>=68"]
build-backend = "setuptools.build_meta"

[project]
name = "ocr-pipeline"
version = "0.1.0"
description = "OCR pipeline for life science screenshots - RAG ready"
readme = "README.md"
requires-python = ">=3.11"
dependencies = [
    # Core
    "typer[all]>=0.9.0",
    "pydantic>=2.6.0",
    "pydantic-settings>=2.2.0",
    "pyyaml>=6.0.1",
    "structlog>=24.1.0",
    "rich>=13.7.0",
    "tqdm>=4.66.0",

    # Image processing
    "opencv-python-headless>=4.9.0",
    "pillow>=10.2.0",
    "numpy>=1.26.0",
    "scikit-image>=0.22.0",

    # OCR engines
    "paddleocr>=2.7.0,<3.0.0", 
    "paddlepaddle>=2.6.0", 
    "pytesseract>=0.3.10",

    # Table detection
    "torch>=2.2.0",
    "torchvision>=0.17.0",
    "transformers>=4.38.0",
    "timm>=1.0.0",
    "layoutparser>=0.3.0",

    # NLP
    "langchain-text-splitters>=0.0.2",
    "spacy>=3.7.0",
    "nbformat>=5.9.0",
    "legacy-cgi>=2.6.2",

    # Database
    "sqlite-utils>=3.37.0",

    # File watching
    "watchdog>=3.0.0",

    # Utilities
    "python-slugify>=8.0.0",
    "xxhash>=3.4.0",
    "python-magic>=0.4.27",
    "platformdirs>=4.2.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=8.0.0",
    "pytest-cov>=4.1.0",
    "pytest-mock>=3.12.0",
    "ruff>=0.2.0",
    "mypy>=1.8.0",
    "pre-commit>=3.6.0",
]
grobid = []
full = [
    "ocr-pipeline[dev]",
]

[project.entry-points.console_scripts]
ocr-pipeline = "ocr_pipeline.cli:app"

[tool.setuptools.packages.find]
where = ["src"]

[tool.uv]
dev-dependencies = [
    "pytest>=8.0.0",
    "pytest-cov>=4.1.0",
    "pytest-mock>=3.12.0",
    "ruff>=0.2.0",
    "mypy>=1.8.0",
    "pre-commit>=3.6.0",
]
override-dependencies = ["lxml>=5.3.0"]

[tool.ruff]
line-length = 100
target-version = "py311"
select = [
    "E",   # pycodestyle
    "F",   # pyflakes
    "I",   # isort
    "N",   # pep8-naming
    "W",   # pycodestyle warnings
    "UP",  # pyupgrade
    "B",   # flake8-bugbear
    "C4",  # flake8-comprehensions
    "T20", # flake8-print
]
ignore = [
    "E501",  # line too long (handled by formatter)
    "B008",  # function calls in default argument
]
fixable = ["I", "E", "W", "F"]
unfixable = ["N", "B", "C4", "T20", "UP"]

[tool.ruff.format]
quote-style = "double"
indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "lf"

[tool.mypy]
python_version = "3.11"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
no_implicit_optional = true
strict_equality = true
show_error_codes = true
pretty = true

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
addopts = "-v --tb=short"
filterwarnings = [
    "ignore::DeprecationWarning",
    "ignore::UserWarning:torch",
    "ignore::UserWarning:transformers",
]

[tool.pre-commit-hooks]
ruff = { id = "ruff", args = ["check", "--fix"] }
ruff-format = { id = "ruff", args = ["format"] }
mypy = { id = "mypy" }
pytest = { id = "pytest", args = ["-x"] }