v1.0.0: VGAE applied to GM12878 vs IMR90 chr21 Hi-C at 25kb

Full reproducible pipeline: .mcool + ChIP-seq bigwigs → latent
  embeddings → A/B compartment calls → cross-cell comparison.

  Key results (chr21, 25 kb, latent dim=32):
  - Test AUC=0.777, AP=0.759 (converged epoch 31/300)
  - GM12878 A/B silhouette (cosine) = 0.775
  - IMR90 zero-shot silhouette = 0.443
  - A-compartment bins stable across cell types (mean cosine Δ=0.042)
  - B-compartment bins shift substantially (mean cosine Δ=0.451)
  - 101 B→A and 70 A→B compartment switches GM12878→IMR90

results/figures/umap_stats.csv

@@ -0,0 +1,3 @@
+label,n_bins,latent_dim,mean_embedding_norm,std_embedding_values,silhouette_AB_cosine
+GM12878,1869,32,0.6679670810699463,0.1371903121471405,0.7748898267745972
+IMR90,1869,32,0.7111130356788635,0.14772675931453705,0.4431541860103607